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# Copyright (C) 2007, 2008 Canonical Ltd
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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# You should have received a copy of the GNU General Public License
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# along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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"""Indexing facilities."""
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'GraphIndexPrefixAdapter',
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from bisect import bisect_right
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from cStringIO import StringIO
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from bzrlib.lazy_import import lazy_import
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lazy_import(globals(), """
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from bzrlib import trace
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from bzrlib.bisect_multi import bisect_multi_bytes
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from bzrlib.revision import NULL_REVISION
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from bzrlib.trace import mutter
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_HEADER_READV = (0, 200)
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_OPTION_KEY_ELEMENTS = "key_elements="
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_OPTION_NODE_REFS = "node_ref_lists="
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_SIGNATURE = "Bazaar Graph Index 1\n"
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_whitespace_re = re.compile('[\t\n\x0b\x0c\r\x00 ]')
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_newline_null_re = re.compile('[\n\0]')
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def _has_key_from_parent_map(self, key):
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"""Check if this index has one key.
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If it's possible to check for multiple keys at once through
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calling get_parent_map that should be faster.
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return (key in self.get_parent_map([key]))
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def _missing_keys_from_parent_map(self, keys):
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return set(keys) - set(self.get_parent_map(keys))
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class GraphIndexBuilder(object):
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"""A builder that can build a GraphIndex.
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The resulting graph has the structure:
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_SIGNATURE OPTIONS NODES NEWLINE
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_SIGNATURE := 'Bazaar Graph Index 1' NEWLINE
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OPTIONS := 'node_ref_lists=' DIGITS NEWLINE
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NODE := KEY NULL ABSENT? NULL REFERENCES NULL VALUE NEWLINE
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KEY := Not-whitespace-utf8
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REFERENCES := REFERENCE_LIST (TAB REFERENCE_LIST){node_ref_lists - 1}
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REFERENCE_LIST := (REFERENCE (CR REFERENCE)*)?
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REFERENCE := DIGITS ; digits is the byte offset in the index of the
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VALUE := no-newline-no-null-bytes
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def __init__(self, reference_lists=0, key_elements=1):
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"""Create a GraphIndex builder.
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:param reference_lists: The number of node references lists for each
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:param key_elements: The number of bytestrings in each key.
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self.reference_lists = reference_lists
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# A dict of {key: (absent, ref_lists, value)}
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self._nodes_by_key = None
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self._key_length = key_elements
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self._optimize_for_size = False
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def _check_key(self, key):
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"""Raise BadIndexKey if key is not a valid key for this index."""
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if type(key) != tuple:
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raise errors.BadIndexKey(key)
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if self._key_length != len(key):
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raise errors.BadIndexKey(key)
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if not element or _whitespace_re.search(element) is not None:
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raise errors.BadIndexKey(element)
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def _external_references(self):
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"""Return references that are not present in this index.
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# TODO: JAM 2008-11-21 This makes an assumption about how the reference
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# lists are used. It is currently correct for pack-0.92 through
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# 1.9, which use the node references (3rd column) second
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# reference list as the compression parent. Perhaps this should
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# be moved into something higher up the stack, since it
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# makes assumptions about how the index is used.
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if self.reference_lists > 1:
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for node in self.iter_all_entries():
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refs.update(node[3][1])
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# If reference_lists == 0 there can be no external references, and
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# if reference_lists == 1, then there isn't a place to store the
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def _get_nodes_by_key(self):
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if self._nodes_by_key is None:
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if self.reference_lists:
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for key, (absent, references, value) in self._nodes.iteritems():
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key_dict = nodes_by_key
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for subkey in key[:-1]:
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key_dict = key_dict.setdefault(subkey, {})
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key_dict[key[-1]] = key, value, references
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for key, (absent, references, value) in self._nodes.iteritems():
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key_dict = nodes_by_key
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for subkey in key[:-1]:
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key_dict = key_dict.setdefault(subkey, {})
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key_dict[key[-1]] = key, value
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self._nodes_by_key = nodes_by_key
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return self._nodes_by_key
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def _update_nodes_by_key(self, key, value, node_refs):
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"""Update the _nodes_by_key dict with a new key.
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For a key of (foo, bar, baz) create
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_nodes_by_key[foo][bar][baz] = key_value
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if self._nodes_by_key is None:
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key_dict = self._nodes_by_key
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if self.reference_lists:
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key_value = key, value, node_refs
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key_value = key, value
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for subkey in key[:-1]:
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key_dict = key_dict.setdefault(subkey, {})
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key_dict[key[-1]] = key_value
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def _check_key_ref_value(self, key, references, value):
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"""Check that 'key' and 'references' are all valid.
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:param key: A key tuple. Must conform to the key interface (be a tuple,
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be of the right length, not have any whitespace or nulls in any key
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:param references: An iterable of reference lists. Something like
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[[(ref, key)], [(ref, key), (other, key)]]
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:param value: The value associate with this key. Must not contain
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newlines or null characters.
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:return: (node_refs, absent_references)
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node_refs basically a packed form of 'references' where all
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absent_references reference keys that are not in self._nodes.
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This may contain duplicates if the same key is
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referenced in multiple lists.
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if _newline_null_re.search(value) is not None:
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raise errors.BadIndexValue(value)
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if len(references) != self.reference_lists:
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raise errors.BadIndexValue(references)
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absent_references = []
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for reference_list in references:
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for reference in reference_list:
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# If reference *is* in self._nodes, then we know it has already
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if reference not in self._nodes:
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self._check_key(reference)
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absent_references.append(reference)
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node_refs.append(tuple(reference_list))
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return tuple(node_refs), absent_references
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def add_node(self, key, value, references=()):
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"""Add a node to the index.
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:param key: The key. keys are non-empty tuples containing
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as many whitespace-free utf8 bytestrings as the key length
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defined for this index.
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:param references: An iterable of iterables of keys. Each is a
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reference to another key.
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:param value: The value to associate with the key. It may be any
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bytes as long as it does not contain \0 or \n.
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absent_references) = self._check_key_ref_value(key, references, value)
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if key in self._nodes and self._nodes[key][0] != 'a':
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raise errors.BadIndexDuplicateKey(key, self)
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for reference in absent_references:
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# There may be duplicates, but I don't think it is worth worrying
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self._nodes[reference] = ('a', (), '')
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self._nodes[key] = ('', node_refs, value)
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if self._nodes_by_key is not None and self._key_length > 1:
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self._update_nodes_by_key(key, value, node_refs)
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lines.append(_OPTION_NODE_REFS + str(self.reference_lists) + '\n')
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lines.append(_OPTION_KEY_ELEMENTS + str(self._key_length) + '\n')
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lines.append(_OPTION_LEN + str(len(self._keys)) + '\n')
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prefix_length = sum(len(x) for x in lines)
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# references are byte offsets. To avoid having to do nasty
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# polynomial work to resolve offsets (references to later in the
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# file cannot be determined until all the inbetween references have
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# been calculated too) we pad the offsets with 0's to make them be
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# of consistent length. Using binary offsets would break the trivial
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# to calculate the width of zero's needed we do three passes:
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# one to gather all the non-reference data and the number of references.
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# one to pad all the data with reference-length and determine entry
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# forward sorted by key. In future we may consider topological sorting,
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# at the cost of table scans for direct lookup, or a second index for
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nodes = sorted(self._nodes.items())
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# if we do not prepass, we don't know how long it will be up front.
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expected_bytes = None
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# we only need to pre-pass if we have reference lists at all.
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if self.reference_lists:
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non_ref_bytes = prefix_length
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# TODO use simple multiplication for the constants in this loop.
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for key, (absent, references, value) in nodes:
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# record the offset known *so far* for this key:
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# the non reference bytes to date, and the total references to
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# date - saves reaccumulating on the second pass
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key_offset_info.append((key, non_ref_bytes, total_references))
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# key is literal, value is literal, there are 3 null's, 1 NL
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# key is variable length tuple, \x00 between elements
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non_ref_bytes += sum(len(element) for element in key)
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if self._key_length > 1:
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non_ref_bytes += self._key_length - 1
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# value is literal bytes, there are 3 null's, 1 NL.
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non_ref_bytes += len(value) + 3 + 1
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# one byte for absent if set.
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elif self.reference_lists:
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# (ref_lists -1) tabs
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non_ref_bytes += self.reference_lists - 1
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# (ref-1 cr's per ref_list)
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for ref_list in references:
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# how many references across the whole file?
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total_references += len(ref_list)
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# accrue reference separators
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non_ref_bytes += len(ref_list) - 1
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# how many digits are needed to represent the total byte count?
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possible_total_bytes = non_ref_bytes + total_references*digits
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while 10 ** digits < possible_total_bytes:
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possible_total_bytes = non_ref_bytes + total_references*digits
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expected_bytes = possible_total_bytes + 1 # terminating newline
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# resolve key addresses.
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for key, non_ref_bytes, total_references in key_offset_info:
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key_addresses[key] = non_ref_bytes + total_references*digits
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format_string = '%%0%sd' % digits
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for key, (absent, references, value) in nodes:
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flattened_references = []
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for ref_list in references:
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for reference in ref_list:
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ref_addresses.append(format_string % key_addresses[reference])
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flattened_references.append('\r'.join(ref_addresses))
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string_key = '\x00'.join(key)
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lines.append("%s\x00%s\x00%s\x00%s\n" % (string_key, absent,
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'\t'.join(flattened_references), value))
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result = StringIO(''.join(lines))
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if expected_bytes and len(result.getvalue()) != expected_bytes:
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raise errors.BzrError('Failed index creation. Internal error:'
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' mismatched output length and expected length: %d %d' %
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(len(result.getvalue()), expected_bytes))
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def set_optimize(self, for_size=True):
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"""Change how the builder tries to optimize the result.
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:param for_size: Tell the builder to try and make the index as small as
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# GraphIndexBuilder itself doesn't pay attention to the flag yet, but
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self._optimize_for_size = for_size
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class GraphIndex(object):
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"""An index for data with embedded graphs.
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The index maps keys to a list of key reference lists, and a value.
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Each node has the same number of key reference lists. Each key reference
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list can be empty or an arbitrary length. The value is an opaque NULL
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terminated string without any newlines. The storage of the index is
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hidden in the interface: keys and key references are always tuples of
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bytestrings, never the internal representation (e.g. dictionary offsets).
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It is presumed that the index will not be mutated - it is static data.
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Successive iter_all_entries calls will read the entire index each time.
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Additionally, iter_entries calls will read the index linearly until the
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desired keys are found. XXX: This must be fixed before the index is
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suitable for production use. :XXX
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def __init__(self, transport, name, size):
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"""Open an index called name on transport.
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:param transport: A bzrlib.transport.Transport.
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:param name: A path to provide to transport API calls.
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:param size: The size of the index in bytes. This is used for bisection
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logic to perform partial index reads. While the size could be
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obtained by statting the file this introduced an additional round
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trip as well as requiring stat'able transports, both of which are
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avoided by having it supplied. If size is None, then bisection
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support will be disabled and accessing the index will just stream
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self._transport = transport
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# Becomes a dict of key:(value, reference-list-byte-locations) used by
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# the bisection interface to store parsed but not resolved keys.
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self._bisect_nodes = None
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# Becomes a dict of key:(value, reference-list-keys) which are ready to
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# be returned directly to callers.
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# a sorted list of slice-addresses for the parsed bytes of the file.
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# e.g. (0,1) would mean that byte 0 is parsed.
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self._parsed_byte_map = []
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# a sorted list of keys matching each slice address for parsed bytes
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# e.g. (None, 'foo@bar') would mean that the first byte contained no
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# key, and the end byte of the slice is the of the data for 'foo@bar'
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self._parsed_key_map = []
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self._key_count = None
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self._keys_by_offset = None
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self._nodes_by_key = None
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# The number of bytes we've read so far in trying to process this file
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def __eq__(self, other):
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"""Equal when self and other were created with the same parameters."""
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type(self) == type(other) and
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self._transport == other._transport and
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self._name == other._name and
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self._size == other._size)
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def __ne__(self, other):
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return not self.__eq__(other)
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return "%s(%r)" % (self.__class__.__name__,
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self._transport.abspath(self._name))
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def _buffer_all(self, stream=None):
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"""Buffer all the index data.
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Mutates self._nodes and self.keys_by_offset.
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if self._nodes is not None:
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# We already did this
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if 'index' in debug.debug_flags:
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mutter('Reading entire index %s', self._transport.abspath(self._name))
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stream = self._transport.get(self._name)
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self._read_prefix(stream)
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self._expected_elements = 3 + self._key_length
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# raw data keyed by offset
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self._keys_by_offset = {}
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# ready-to-return key:value or key:value, node_ref_lists
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self._nodes_by_key = None
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lines = stream.read().split('\n')
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_, _, _, trailers = self._parse_lines(lines, pos)
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for key, absent, references, value in self._keys_by_offset.itervalues():
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# resolve references:
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if self.node_ref_lists:
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node_value = (value, self._resolve_references(references))
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self._nodes[key] = node_value
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# cache the keys for quick set intersections
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self._keys = set(self._nodes)
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# there must be one line - the empty trailer line.
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raise errors.BadIndexData(self)
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def external_references(self, ref_list_num):
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"""Return references that are not present in this index.
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if ref_list_num + 1 > self.node_ref_lists:
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raise ValueError('No ref list %d, index has %d ref lists'
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% (ref_list_num, self.node_ref_lists))
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for key, (value, ref_lists) in self._nodes.iteritems():
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ref_list = ref_lists[ref_list_num]
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refs.update(ref_list)
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return refs - self._keys
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def _get_nodes_by_key(self):
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if self._nodes_by_key is None:
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if self.node_ref_lists:
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for key, (value, references) in self._nodes.iteritems():
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key_dict = nodes_by_key
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for subkey in key[:-1]:
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key_dict = key_dict.setdefault(subkey, {})
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key_dict[key[-1]] = key, value, references
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for key, value in self._nodes.iteritems():
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key_dict = nodes_by_key
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for subkey in key[:-1]:
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key_dict = key_dict.setdefault(subkey, {})
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key_dict[key[-1]] = key, value
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self._nodes_by_key = nodes_by_key
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return self._nodes_by_key
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def iter_all_entries(self):
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"""Iterate over all keys within the index.
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:return: An iterable of (index, key, value) or (index, key, value, reference_lists).
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The former tuple is used when there are no reference lists in the
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index, making the API compatible with simple key:value index types.
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There is no defined order for the result iteration - it will be in
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the most efficient order for the index.
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if 'evil' in debug.debug_flags:
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trace.mutter_callsite(3,
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"iter_all_entries scales with size of history.")
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if self._nodes is None:
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if self.node_ref_lists:
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for key, (value, node_ref_lists) in self._nodes.iteritems():
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yield self, key, value, node_ref_lists
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for key, value in self._nodes.iteritems():
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yield self, key, value
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def _read_prefix(self, stream):
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signature = stream.read(len(self._signature()))
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if not signature == self._signature():
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raise errors.BadIndexFormatSignature(self._name, GraphIndex)
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options_line = stream.readline()
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if not options_line.startswith(_OPTION_NODE_REFS):
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raise errors.BadIndexOptions(self)
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self.node_ref_lists = int(options_line[len(_OPTION_NODE_REFS):-1])
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raise errors.BadIndexOptions(self)
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options_line = stream.readline()
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if not options_line.startswith(_OPTION_KEY_ELEMENTS):
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raise errors.BadIndexOptions(self)
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self._key_length = int(options_line[len(_OPTION_KEY_ELEMENTS):-1])
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raise errors.BadIndexOptions(self)
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options_line = stream.readline()
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if not options_line.startswith(_OPTION_LEN):
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raise errors.BadIndexOptions(self)
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self._key_count = int(options_line[len(_OPTION_LEN):-1])
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raise errors.BadIndexOptions(self)
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def _resolve_references(self, references):
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"""Return the resolved key references for references.
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References are resolved by looking up the location of the key in the
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_keys_by_offset map and substituting the key name, preserving ordering.
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:param references: An iterable of iterables of key locations. e.g.
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:return: A tuple of tuples of keys.
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for ref_list in references:
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node_refs.append(tuple([self._keys_by_offset[ref][0] for ref in ref_list]))
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return tuple(node_refs)
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def _find_index(self, range_map, key):
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"""Helper for the _parsed_*_index calls.
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Given a range map - [(start, end), ...], finds the index of the range
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in the map for key if it is in the map, and if it is not there, the
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immediately preceeding range in the map.
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result = bisect_right(range_map, key) - 1
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if result + 1 < len(range_map):
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# check the border condition, it may be in result + 1
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if range_map[result + 1][0] == key[0]:
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def _parsed_byte_index(self, offset):
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"""Return the index of the entry immediately before offset.
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e.g. if the parsed map has regions 0,10 and 11,12 parsed, meaning that
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there is one unparsed byte (the 11th, addressed as[10]). then:
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asking for 0 will return 0
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asking for 10 will return 0
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asking for 11 will return 1
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asking for 12 will return 1
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return self._find_index(self._parsed_byte_map, key)
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def _parsed_key_index(self, key):
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"""Return the index of the entry immediately before key.
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e.g. if the parsed map has regions (None, 'a') and ('b','c') parsed,
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meaning that keys from None to 'a' inclusive, and 'b' to 'c' inclusive
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have been parsed, then:
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asking for '' will return 0
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asking for 'a' will return 0
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asking for 'b' will return 1
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asking for 'e' will return 1
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search_key = (key, None)
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return self._find_index(self._parsed_key_map, search_key)
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def _is_parsed(self, offset):
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"""Returns True if offset has been parsed."""
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index = self._parsed_byte_index(offset)
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if index == len(self._parsed_byte_map):
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return offset < self._parsed_byte_map[index - 1][1]
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start, end = self._parsed_byte_map[index]
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return offset >= start and offset < end
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def _iter_entries_from_total_buffer(self, keys):
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"""Iterate over keys when the entire index is parsed."""
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keys = keys.intersection(self._keys)
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if self.node_ref_lists:
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value, node_refs = self._nodes[key]
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yield self, key, value, node_refs
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yield self, key, self._nodes[key]
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def iter_entries(self, keys):
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"""Iterate over keys within the index.
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:param keys: An iterable providing the keys to be retrieved.
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:return: An iterable as per iter_all_entries, but restricted to the
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keys supplied. No additional keys will be returned, and every
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key supplied that is in the index will be returned.
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if self._size is None and self._nodes is None:
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# We fit about 20 keys per minimum-read (4K), so if we are looking for
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# more than 1/20th of the index its likely (assuming homogenous key
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# spread) that we'll read the entire index. If we're going to do that,
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# buffer the whole thing. A better analysis might take key spread into
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# account - but B+Tree indices are better anyway.
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# We could look at all data read, and use a threshold there, which will
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# trigger on ancestry walks, but that is not yet fully mapped out.
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if self._nodes is None and len(keys) * 20 > self.key_count():
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if self._nodes is not None:
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return self._iter_entries_from_total_buffer(keys)
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return (result[1] for result in bisect_multi_bytes(
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self._lookup_keys_via_location, self._size, keys))
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def iter_entries_prefix(self, keys):
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"""Iterate over keys within the index using prefix matching.
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Prefix matching is applied within the tuple of a key, not to within
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the bytestring of each key element. e.g. if you have the keys ('foo',
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'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
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only the former key is returned.
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WARNING: Note that this method currently causes a full index parse
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unconditionally (which is reasonably appropriate as it is a means for
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thunking many small indices into one larger one and still supplies
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iter_all_entries at the thunk layer).
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:param keys: An iterable providing the key prefixes to be retrieved.
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Each key prefix takes the form of a tuple the length of a key, but
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with the last N elements 'None' rather than a regular bytestring.
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The first element cannot be 'None'.
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:return: An iterable as per iter_all_entries, but restricted to the
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keys with a matching prefix to those supplied. No additional keys
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will be returned, and every match that is in the index will be
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# load data - also finds key lengths
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if self._nodes is None:
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if self._key_length == 1:
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raise errors.BadIndexKey(key)
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if len(key) != self._key_length:
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raise errors.BadIndexKey(key)
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if self.node_ref_lists:
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value, node_refs = self._nodes[key]
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yield self, key, value, node_refs
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yield self, key, self._nodes[key]
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nodes_by_key = self._get_nodes_by_key()
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raise errors.BadIndexKey(key)
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if len(key) != self._key_length:
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raise errors.BadIndexKey(key)
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# find what it refers to:
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key_dict = nodes_by_key
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# find the subdict whose contents should be returned.
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while len(elements) and elements[0] is not None:
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key_dict = key_dict[elements[0]]
677
# a non-existant lookup.
682
key_dict = dicts.pop(-1)
683
# can't be empty or would not exist
684
item, value = key_dict.iteritems().next()
685
if type(value) == dict:
687
dicts.extend(key_dict.itervalues())
690
for value in key_dict.itervalues():
691
# each value is the key:value:node refs tuple
693
yield (self, ) + value
695
# the last thing looked up was a terminal element
696
yield (self, ) + key_dict
699
"""Return an estimate of the number of keys in this index.
701
For GraphIndex the estimate is exact.
703
if self._key_count is None:
704
self._read_and_parse([_HEADER_READV])
705
return self._key_count
707
def _lookup_keys_via_location(self, location_keys):
708
"""Public interface for implementing bisection.
710
If _buffer_all has been called, then all the data for the index is in
711
memory, and this method should not be called, as it uses a separate
712
cache because it cannot pre-resolve all indices, which buffer_all does
715
:param location_keys: A list of location(byte offset), key tuples.
716
:return: A list of (location_key, result) tuples as expected by
717
bzrlib.bisect_multi.bisect_multi_bytes.
719
# Possible improvements:
720
# - only bisect lookup each key once
721
# - sort the keys first, and use that to reduce the bisection window
723
# this progresses in three parts:
726
# attempt to answer the question from the now in memory data.
727
# build the readv request
728
# for each location, ask for 800 bytes - much more than rows we've seen
731
for location, key in location_keys:
732
# can we answer from cache?
733
if self._bisect_nodes and key in self._bisect_nodes:
734
# We have the key parsed.
736
index = self._parsed_key_index(key)
737
if (len(self._parsed_key_map) and
738
self._parsed_key_map[index][0] <= key and
739
(self._parsed_key_map[index][1] >= key or
740
# end of the file has been parsed
741
self._parsed_byte_map[index][1] == self._size)):
742
# the key has been parsed, so no lookup is needed even if its
745
# - if we have examined this part of the file already - yes
746
index = self._parsed_byte_index(location)
747
if (len(self._parsed_byte_map) and
748
self._parsed_byte_map[index][0] <= location and
749
self._parsed_byte_map[index][1] > location):
750
# the byte region has been parsed, so no read is needed.
753
if location + length > self._size:
754
length = self._size - location
755
# todo, trim out parsed locations.
757
readv_ranges.append((location, length))
758
# read the header if needed
759
if self._bisect_nodes is None:
760
readv_ranges.append(_HEADER_READV)
761
self._read_and_parse(readv_ranges)
763
if self._nodes is not None:
764
# _read_and_parse triggered a _buffer_all because we requested the
766
for location, key in location_keys:
767
if key not in self._nodes: # not present
768
result.append(((location, key), False))
769
elif self.node_ref_lists:
770
value, refs = self._nodes[key]
771
result.append(((location, key),
772
(self, key, value, refs)))
774
result.append(((location, key),
775
(self, key, self._nodes[key])))
778
# - figure out <, >, missing, present
779
# - result present references so we can return them.
780
# keys that we cannot answer until we resolve references
781
pending_references = []
782
pending_locations = set()
783
for location, key in location_keys:
784
# can we answer from cache?
785
if key in self._bisect_nodes:
786
# the key has been parsed, so no lookup is needed
787
if self.node_ref_lists:
788
# the references may not have been all parsed.
789
value, refs = self._bisect_nodes[key]
790
wanted_locations = []
791
for ref_list in refs:
793
if ref not in self._keys_by_offset:
794
wanted_locations.append(ref)
796
pending_locations.update(wanted_locations)
797
pending_references.append((location, key))
799
result.append(((location, key), (self, key,
800
value, self._resolve_references(refs))))
802
result.append(((location, key),
803
(self, key, self._bisect_nodes[key])))
806
# has the region the key should be in, been parsed?
807
index = self._parsed_key_index(key)
808
if (self._parsed_key_map[index][0] <= key and
809
(self._parsed_key_map[index][1] >= key or
810
# end of the file has been parsed
811
self._parsed_byte_map[index][1] == self._size)):
812
result.append(((location, key), False))
814
# no, is the key above or below the probed location:
815
# get the range of the probed & parsed location
816
index = self._parsed_byte_index(location)
817
# if the key is below the start of the range, its below
818
if key < self._parsed_key_map[index][0]:
822
result.append(((location, key), direction))
824
# lookup data to resolve references
825
for location in pending_locations:
827
if location + length > self._size:
828
length = self._size - location
829
# TODO: trim out parsed locations (e.g. if the 800 is into the
830
# parsed region trim it, and dont use the adjust_for_latency
833
readv_ranges.append((location, length))
834
self._read_and_parse(readv_ranges)
835
if self._nodes is not None:
836
# The _read_and_parse triggered a _buffer_all, grab the data and
838
for location, key in pending_references:
839
value, refs = self._nodes[key]
840
result.append(((location, key), (self, key, value, refs)))
842
for location, key in pending_references:
843
# answer key references we had to look-up-late.
844
value, refs = self._bisect_nodes[key]
845
result.append(((location, key), (self, key,
846
value, self._resolve_references(refs))))
849
def _parse_header_from_bytes(self, bytes):
850
"""Parse the header from a region of bytes.
852
:param bytes: The data to parse.
853
:return: An offset, data tuple such as readv yields, for the unparsed
854
data. (which may length 0).
856
signature = bytes[0:len(self._signature())]
857
if not signature == self._signature():
858
raise errors.BadIndexFormatSignature(self._name, GraphIndex)
859
lines = bytes[len(self._signature()):].splitlines()
860
options_line = lines[0]
861
if not options_line.startswith(_OPTION_NODE_REFS):
862
raise errors.BadIndexOptions(self)
864
self.node_ref_lists = int(options_line[len(_OPTION_NODE_REFS):])
866
raise errors.BadIndexOptions(self)
867
options_line = lines[1]
868
if not options_line.startswith(_OPTION_KEY_ELEMENTS):
869
raise errors.BadIndexOptions(self)
871
self._key_length = int(options_line[len(_OPTION_KEY_ELEMENTS):])
873
raise errors.BadIndexOptions(self)
874
options_line = lines[2]
875
if not options_line.startswith(_OPTION_LEN):
876
raise errors.BadIndexOptions(self)
878
self._key_count = int(options_line[len(_OPTION_LEN):])
880
raise errors.BadIndexOptions(self)
881
# calculate the bytes we have processed
882
header_end = (len(signature) + len(lines[0]) + len(lines[1]) +
884
self._parsed_bytes(0, None, header_end, None)
885
# setup parsing state
886
self._expected_elements = 3 + self._key_length
887
# raw data keyed by offset
888
self._keys_by_offset = {}
889
# keys with the value and node references
890
self._bisect_nodes = {}
891
return header_end, bytes[header_end:]
893
def _parse_region(self, offset, data):
894
"""Parse node data returned from a readv operation.
896
:param offset: The byte offset the data starts at.
897
:param data: The data to parse.
901
end = offset + len(data)
904
# Trivial test - if the current index's end is within the
905
# low-matching parsed range, we're done.
906
index = self._parsed_byte_index(high_parsed)
907
if end < self._parsed_byte_map[index][1]:
909
# print "[%d:%d]" % (offset, end), \
910
# self._parsed_byte_map[index:index + 2]
911
high_parsed, last_segment = self._parse_segment(
912
offset, data, end, index)
916
def _parse_segment(self, offset, data, end, index):
917
"""Parse one segment of data.
919
:param offset: Where 'data' begins in the file.
920
:param data: Some data to parse a segment of.
921
:param end: Where data ends
922
:param index: The current index into the parsed bytes map.
923
:return: True if the parsed segment is the last possible one in the
925
:return: high_parsed_byte, last_segment.
926
high_parsed_byte is the location of the highest parsed byte in this
927
segment, last_segment is True if the parsed segment is the last
928
possible one in the data block.
930
# default is to use all data
932
# accomodate overlap with data before this.
933
if offset < self._parsed_byte_map[index][1]:
934
# overlaps the lower parsed region
935
# skip the parsed data
936
trim_start = self._parsed_byte_map[index][1] - offset
937
# don't trim the start for \n
938
start_adjacent = True
939
elif offset == self._parsed_byte_map[index][1]:
940
# abuts the lower parsed region
943
# do not trim anything
944
start_adjacent = True
946
# does not overlap the lower parsed region
949
# but trim the leading \n
950
start_adjacent = False
951
if end == self._size:
952
# lines up to the end of all data:
955
# do not strip to the last \n
958
elif index + 1 == len(self._parsed_byte_map):
959
# at the end of the parsed data
962
# but strip to the last \n
965
elif end == self._parsed_byte_map[index + 1][0]:
966
# buts up against the next parsed region
969
# do not strip to the last \n
972
elif end > self._parsed_byte_map[index + 1][0]:
973
# overlaps into the next parsed region
974
# only consider the unparsed data
975
trim_end = self._parsed_byte_map[index + 1][0] - offset
976
# do not strip to the last \n as we know its an entire record
978
last_segment = end < self._parsed_byte_map[index + 1][1]
980
# does not overlap into the next region
983
# but strip to the last \n
986
# now find bytes to discard if needed
987
if not start_adjacent:
988
# work around python bug in rfind
989
if trim_start is None:
990
trim_start = data.find('\n') + 1
992
trim_start = data.find('\n', trim_start) + 1
993
if not (trim_start != 0):
994
raise AssertionError('no \n was present')
995
# print 'removing start', offset, trim_start, repr(data[:trim_start])
997
# work around python bug in rfind
999
trim_end = data.rfind('\n') + 1
1001
trim_end = data.rfind('\n', None, trim_end) + 1
1002
if not (trim_end != 0):
1003
raise AssertionError('no \n was present')
1004
# print 'removing end', offset, trim_end, repr(data[trim_end:])
1005
# adjust offset and data to the parseable data.
1006
trimmed_data = data[trim_start:trim_end]
1007
if not (trimmed_data):
1008
raise AssertionError('read unneeded data [%d:%d] from [%d:%d]'
1009
% (trim_start, trim_end, offset, offset + len(data)))
1011
offset += trim_start
1012
# print "parsing", repr(trimmed_data)
1013
# splitlines mangles the \r delimiters.. don't use it.
1014
lines = trimmed_data.split('\n')
1017
first_key, last_key, nodes, _ = self._parse_lines(lines, pos)
1018
for key, value in nodes:
1019
self._bisect_nodes[key] = value
1020
self._parsed_bytes(offset, first_key,
1021
offset + len(trimmed_data), last_key)
1022
return offset + len(trimmed_data), last_segment
1024
def _parse_lines(self, lines, pos):
1031
# must be at the end
1033
if not (self._size == pos + 1):
1034
raise AssertionError("%s %s" % (self._size, pos))
1037
elements = line.split('\0')
1038
if len(elements) != self._expected_elements:
1039
raise errors.BadIndexData(self)
1040
# keys are tuples. Each element is a string that may occur many
1041
# times, so we intern them to save space. AB, RC, 200807
1042
key = tuple([intern(element) for element in elements[:self._key_length]])
1043
if first_key is None:
1045
absent, references, value = elements[-3:]
1047
for ref_string in references.split('\t'):
1048
ref_lists.append(tuple([
1049
int(ref) for ref in ref_string.split('\r') if ref
1051
ref_lists = tuple(ref_lists)
1052
self._keys_by_offset[pos] = (key, absent, ref_lists, value)
1053
pos += len(line) + 1 # +1 for the \n
1056
if self.node_ref_lists:
1057
node_value = (value, ref_lists)
1060
nodes.append((key, node_value))
1061
# print "parsed ", key
1062
return first_key, key, nodes, trailers
1064
def _parsed_bytes(self, start, start_key, end, end_key):
1065
"""Mark the bytes from start to end as parsed.
1067
Calling self._parsed_bytes(1,2) will mark one byte (the one at offset
1070
:param start: The start of the parsed region.
1071
:param end: The end of the parsed region.
1073
index = self._parsed_byte_index(start)
1074
new_value = (start, end)
1075
new_key = (start_key, end_key)
1077
# first range parsed is always the beginning.
1078
self._parsed_byte_map.insert(index, new_value)
1079
self._parsed_key_map.insert(index, new_key)
1083
# extend lower region
1084
# extend higher region
1085
# combine two regions
1086
if (index + 1 < len(self._parsed_byte_map) and
1087
self._parsed_byte_map[index][1] == start and
1088
self._parsed_byte_map[index + 1][0] == end):
1089
# combine two regions
1090
self._parsed_byte_map[index] = (self._parsed_byte_map[index][0],
1091
self._parsed_byte_map[index + 1][1])
1092
self._parsed_key_map[index] = (self._parsed_key_map[index][0],
1093
self._parsed_key_map[index + 1][1])
1094
del self._parsed_byte_map[index + 1]
1095
del self._parsed_key_map[index + 1]
1096
elif self._parsed_byte_map[index][1] == start:
1097
# extend the lower entry
1098
self._parsed_byte_map[index] = (
1099
self._parsed_byte_map[index][0], end)
1100
self._parsed_key_map[index] = (
1101
self._parsed_key_map[index][0], end_key)
1102
elif (index + 1 < len(self._parsed_byte_map) and
1103
self._parsed_byte_map[index + 1][0] == end):
1104
# extend the higher entry
1105
self._parsed_byte_map[index + 1] = (
1106
start, self._parsed_byte_map[index + 1][1])
1107
self._parsed_key_map[index + 1] = (
1108
start_key, self._parsed_key_map[index + 1][1])
1111
self._parsed_byte_map.insert(index + 1, new_value)
1112
self._parsed_key_map.insert(index + 1, new_key)
1114
def _read_and_parse(self, readv_ranges):
1115
"""Read the the ranges and parse the resulting data.
1117
:param readv_ranges: A prepared readv range list.
1119
if not readv_ranges:
1121
if self._nodes is None and self._bytes_read * 2 >= self._size:
1122
# We've already read more than 50% of the file and we are about to
1123
# request more data, just _buffer_all() and be done
1127
readv_data = self._transport.readv(self._name, readv_ranges, True,
1130
for offset, data in readv_data:
1131
self._bytes_read += len(data)
1132
if offset == 0 and len(data) == self._size:
1133
# We read the whole range, most likely because the
1134
# Transport upcast our readv ranges into one long request
1135
# for enough total data to grab the whole index.
1136
self._buffer_all(StringIO(data))
1138
if self._bisect_nodes is None:
1139
# this must be the start
1140
if not (offset == 0):
1141
raise AssertionError()
1142
offset, data = self._parse_header_from_bytes(data)
1143
# print readv_ranges, "[%d:%d]" % (offset, offset + len(data))
1144
self._parse_region(offset, data)
1146
def _signature(self):
1147
"""The file signature for this index type."""
1151
"""Validate that everything in the index can be accessed."""
1152
# iter_all validates completely at the moment, so just do that.
1153
for node in self.iter_all_entries():
1157
class CombinedGraphIndex(object):
1158
"""A GraphIndex made up from smaller GraphIndices.
1160
The backing indices must implement GraphIndex, and are presumed to be
1163
Queries against the combined index will be made against the first index,
1164
and then the second and so on. The order of index's can thus influence
1165
performance significantly. For example, if one index is on local disk and a
1166
second on a remote server, the local disk index should be before the other
1170
def __init__(self, indices, reload_func=None):
1171
"""Create a CombinedGraphIndex backed by indices.
1173
:param indices: An ordered list of indices to query for data.
1174
:param reload_func: A function to call if we find we are missing an
1175
index. Should have the form reload_func() => True/False to indicate
1176
if reloading actually changed anything.
1178
self._indices = indices
1179
self._reload_func = reload_func
1183
self.__class__.__name__,
1184
', '.join(map(repr, self._indices)))
1186
def get_parent_map(self, keys):
1187
"""See graph._StackedParentsProvider.get_parent_map"""
1188
search_keys = set(keys)
1189
if NULL_REVISION in search_keys:
1190
search_keys.discard(NULL_REVISION)
1191
found_parents = {NULL_REVISION:[]}
1194
for index, key, value, refs in self.iter_entries(search_keys):
1197
parents = (NULL_REVISION,)
1198
found_parents[key] = parents
1199
return found_parents
1201
has_key = _has_key_from_parent_map
1203
def insert_index(self, pos, index):
1204
"""Insert a new index in the list of indices to query.
1206
:param pos: The position to insert the index.
1207
:param index: The index to insert.
1209
self._indices.insert(pos, index)
1211
def iter_all_entries(self):
1212
"""Iterate over all keys within the index
1214
Duplicate keys across child indices are presumed to have the same
1215
value and are only reported once.
1217
:return: An iterable of (index, key, reference_lists, value).
1218
There is no defined order for the result iteration - it will be in
1219
the most efficient order for the index.
1224
for index in self._indices:
1225
for node in index.iter_all_entries():
1226
if node[1] not in seen_keys:
1228
seen_keys.add(node[1])
1230
except errors.NoSuchFile:
1231
self._reload_or_raise()
1233
def iter_entries(self, keys):
1234
"""Iterate over keys within the index.
1236
Duplicate keys across child indices are presumed to have the same
1237
value and are only reported once.
1239
:param keys: An iterable providing the keys to be retrieved.
1240
:return: An iterable of (index, key, reference_lists, value). There is no
1241
defined order for the result iteration - it will be in the most
1242
efficient order for the index.
1247
for index in self._indices:
1250
for node in index.iter_entries(keys):
1251
keys.remove(node[1])
1254
except errors.NoSuchFile:
1255
self._reload_or_raise()
1257
def iter_entries_prefix(self, keys):
1258
"""Iterate over keys within the index using prefix matching.
1260
Duplicate keys across child indices are presumed to have the same
1261
value and are only reported once.
1263
Prefix matching is applied within the tuple of a key, not to within
1264
the bytestring of each key element. e.g. if you have the keys ('foo',
1265
'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
1266
only the former key is returned.
1268
:param keys: An iterable providing the key prefixes to be retrieved.
1269
Each key prefix takes the form of a tuple the length of a key, but
1270
with the last N elements 'None' rather than a regular bytestring.
1271
The first element cannot be 'None'.
1272
:return: An iterable as per iter_all_entries, but restricted to the
1273
keys with a matching prefix to those supplied. No additional keys
1274
will be returned, and every match that is in the index will be
1283
for index in self._indices:
1284
for node in index.iter_entries_prefix(keys):
1285
if node[1] in seen_keys:
1287
seen_keys.add(node[1])
1290
except errors.NoSuchFile:
1291
self._reload_or_raise()
1293
def key_count(self):
1294
"""Return an estimate of the number of keys in this index.
1296
For CombinedGraphIndex this is approximated by the sum of the keys of
1297
the child indices. As child indices may have duplicate keys this can
1298
have a maximum error of the number of child indices * largest number of
1303
return sum((index.key_count() for index in self._indices), 0)
1304
except errors.NoSuchFile:
1305
self._reload_or_raise()
1307
missing_keys = _missing_keys_from_parent_map
1309
def _reload_or_raise(self):
1310
"""We just got a NoSuchFile exception.
1312
Try to reload the indices, if it fails, just raise the current
1315
if self._reload_func is None:
1317
exc_type, exc_value, exc_traceback = sys.exc_info()
1318
trace.mutter('Trying to reload after getting exception: %s',
1320
if not self._reload_func():
1321
# We tried to reload, but nothing changed, so we fail anyway
1322
trace.mutter('_reload_func indicated nothing has changed.'
1323
' Raising original exception.')
1324
raise exc_type, exc_value, exc_traceback
1327
"""Validate that everything in the index can be accessed."""
1330
for index in self._indices:
1333
except errors.NoSuchFile:
1334
self._reload_or_raise()
1337
class InMemoryGraphIndex(GraphIndexBuilder):
1338
"""A GraphIndex which operates entirely out of memory and is mutable.
1340
This is designed to allow the accumulation of GraphIndex entries during a
1341
single write operation, where the accumulated entries need to be immediately
1342
available - for example via a CombinedGraphIndex.
1345
def add_nodes(self, nodes):
1346
"""Add nodes to the index.
1348
:param nodes: An iterable of (key, node_refs, value) entries to add.
1350
if self.reference_lists:
1351
for (key, value, node_refs) in nodes:
1352
self.add_node(key, value, node_refs)
1354
for (key, value) in nodes:
1355
self.add_node(key, value)
1357
def iter_all_entries(self):
1358
"""Iterate over all keys within the index
1360
:return: An iterable of (index, key, reference_lists, value). There is no
1361
defined order for the result iteration - it will be in the most
1362
efficient order for the index (in this case dictionary hash order).
1364
if 'evil' in debug.debug_flags:
1365
trace.mutter_callsite(3,
1366
"iter_all_entries scales with size of history.")
1367
if self.reference_lists:
1368
for key, (absent, references, value) in self._nodes.iteritems():
1370
yield self, key, value, references
1372
for key, (absent, references, value) in self._nodes.iteritems():
1374
yield self, key, value
1376
def iter_entries(self, keys):
1377
"""Iterate over keys within the index.
1379
:param keys: An iterable providing the keys to be retrieved.
1380
:return: An iterable of (index, key, value, reference_lists). There is no
1381
defined order for the result iteration - it will be in the most
1382
efficient order for the index (keys iteration order in this case).
1385
if self.reference_lists:
1386
for key in keys.intersection(self._keys):
1387
node = self._nodes[key]
1389
yield self, key, node[2], node[1]
1391
for key in keys.intersection(self._keys):
1392
node = self._nodes[key]
1394
yield self, key, node[2]
1396
def iter_entries_prefix(self, keys):
1397
"""Iterate over keys within the index using prefix matching.
1399
Prefix matching is applied within the tuple of a key, not to within
1400
the bytestring of each key element. e.g. if you have the keys ('foo',
1401
'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
1402
only the former key is returned.
1404
:param keys: An iterable providing the key prefixes to be retrieved.
1405
Each key prefix takes the form of a tuple the length of a key, but
1406
with the last N elements 'None' rather than a regular bytestring.
1407
The first element cannot be 'None'.
1408
:return: An iterable as per iter_all_entries, but restricted to the
1409
keys with a matching prefix to those supplied. No additional keys
1410
will be returned, and every match that is in the index will be
1413
# XXX: To much duplication with the GraphIndex class; consider finding
1414
# a good place to pull out the actual common logic.
1418
if self._key_length == 1:
1422
raise errors.BadIndexKey(key)
1423
if len(key) != self._key_length:
1424
raise errors.BadIndexKey(key)
1425
node = self._nodes[key]
1428
if self.reference_lists:
1429
yield self, key, node[2], node[1]
1431
yield self, key, node[2]
1433
nodes_by_key = self._get_nodes_by_key()
1437
raise errors.BadIndexKey(key)
1438
if len(key) != self._key_length:
1439
raise errors.BadIndexKey(key)
1440
# find what it refers to:
1441
key_dict = nodes_by_key
1442
elements = list(key)
1443
# find the subdict to return
1445
while len(elements) and elements[0] is not None:
1446
key_dict = key_dict[elements[0]]
1449
# a non-existant lookup.
1454
key_dict = dicts.pop(-1)
1455
# can't be empty or would not exist
1456
item, value = key_dict.iteritems().next()
1457
if type(value) == dict:
1459
dicts.extend(key_dict.itervalues())
1462
for value in key_dict.itervalues():
1463
yield (self, ) + value
1465
yield (self, ) + key_dict
1467
def key_count(self):
1468
"""Return an estimate of the number of keys in this index.
1470
For InMemoryGraphIndex the estimate is exact.
1472
return len(self._keys)
1475
"""In memory index's have no known corruption at the moment."""
1478
class GraphIndexPrefixAdapter(object):
1479
"""An adapter between GraphIndex with different key lengths.
1481
Queries against this will emit queries against the adapted Graph with the
1482
prefix added, queries for all items use iter_entries_prefix. The returned
1483
nodes will have their keys and node references adjusted to remove the
1484
prefix. Finally, an add_nodes_callback can be supplied - when called the
1485
nodes and references being added will have prefix prepended.
1488
def __init__(self, adapted, prefix, missing_key_length,
1489
add_nodes_callback=None):
1490
"""Construct an adapter against adapted with prefix."""
1491
self.adapted = adapted
1492
self.prefix_key = prefix + (None,)*missing_key_length
1493
self.prefix = prefix
1494
self.prefix_len = len(prefix)
1495
self.add_nodes_callback = add_nodes_callback
1497
def add_nodes(self, nodes):
1498
"""Add nodes to the index.
1500
:param nodes: An iterable of (key, node_refs, value) entries to add.
1502
# save nodes in case its an iterator
1503
nodes = tuple(nodes)
1504
translated_nodes = []
1506
# Add prefix_key to each reference node_refs is a tuple of tuples,
1507
# so split it apart, and add prefix_key to the internal reference
1508
for (key, value, node_refs) in nodes:
1509
adjusted_references = (
1510
tuple(tuple(self.prefix + ref_node for ref_node in ref_list)
1511
for ref_list in node_refs))
1512
translated_nodes.append((self.prefix + key, value,
1513
adjusted_references))
1515
# XXX: TODO add an explicit interface for getting the reference list
1516
# status, to handle this bit of user-friendliness in the API more
1518
for (key, value) in nodes:
1519
translated_nodes.append((self.prefix + key, value))
1520
self.add_nodes_callback(translated_nodes)
1522
def add_node(self, key, value, references=()):
1523
"""Add a node to the index.
1525
:param key: The key. keys are non-empty tuples containing
1526
as many whitespace-free utf8 bytestrings as the key length
1527
defined for this index.
1528
:param references: An iterable of iterables of keys. Each is a
1529
reference to another key.
1530
:param value: The value to associate with the key. It may be any
1531
bytes as long as it does not contain \0 or \n.
1533
self.add_nodes(((key, value, references), ))
1535
def _strip_prefix(self, an_iter):
1536
"""Strip prefix data from nodes and return it."""
1537
for node in an_iter:
1539
if node[1][:self.prefix_len] != self.prefix:
1540
raise errors.BadIndexData(self)
1541
for ref_list in node[3]:
1542
for ref_node in ref_list:
1543
if ref_node[:self.prefix_len] != self.prefix:
1544
raise errors.BadIndexData(self)
1545
yield node[0], node[1][self.prefix_len:], node[2], (
1546
tuple(tuple(ref_node[self.prefix_len:] for ref_node in ref_list)
1547
for ref_list in node[3]))
1549
def iter_all_entries(self):
1550
"""Iterate over all keys within the index
1552
iter_all_entries is implemented against the adapted index using
1553
iter_entries_prefix.
1555
:return: An iterable of (index, key, reference_lists, value). There is no
1556
defined order for the result iteration - it will be in the most
1557
efficient order for the index (in this case dictionary hash order).
1559
return self._strip_prefix(self.adapted.iter_entries_prefix([self.prefix_key]))
1561
def iter_entries(self, keys):
1562
"""Iterate over keys within the index.
1564
:param keys: An iterable providing the keys to be retrieved.
1565
:return: An iterable of (index, key, value, reference_lists). There is no
1566
defined order for the result iteration - it will be in the most
1567
efficient order for the index (keys iteration order in this case).
1569
return self._strip_prefix(self.adapted.iter_entries(
1570
self.prefix + key for key in keys))
1572
def iter_entries_prefix(self, keys):
1573
"""Iterate over keys within the index using prefix matching.
1575
Prefix matching is applied within the tuple of a key, not to within
1576
the bytestring of each key element. e.g. if you have the keys ('foo',
1577
'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
1578
only the former key is returned.
1580
:param keys: An iterable providing the key prefixes to be retrieved.
1581
Each key prefix takes the form of a tuple the length of a key, but
1582
with the last N elements 'None' rather than a regular bytestring.
1583
The first element cannot be 'None'.
1584
:return: An iterable as per iter_all_entries, but restricted to the
1585
keys with a matching prefix to those supplied. No additional keys
1586
will be returned, and every match that is in the index will be
1589
return self._strip_prefix(self.adapted.iter_entries_prefix(
1590
self.prefix + key for key in keys))
1592
def key_count(self):
1593
"""Return an estimate of the number of keys in this index.
1595
For GraphIndexPrefixAdapter this is relatively expensive - key
1596
iteration with the prefix is done.
1598
return len(list(self.iter_all_entries()))
1601
"""Call the adapted's validate."""
1602
self.adapted.validate()
added
removed
bzrlib/index.py
